If you want to specify certain warehouses when exporting quantities back to the webstore, you can do this by doing the following…
- Click on Webstore > Configure
- Choose the Template you want to change and click EDIT
- Click next until the Options Screens.
- There is a field called “Comma-Seperated WarehouseIDs for Inventory Export”. Enter in the ID’s here.
- Finally, Close and save the template and run a webstore sync.